SNP Profiles of TSA 644 View Data

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_Input profile	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
1._GC-08-175-4-18	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
2._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
3._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
4._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
5._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
6._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
7._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
8._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
9._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
10._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
11._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
12._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	CT
13._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AG	AC	TT
14._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	_	AC	CT
15._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT
16._GC-08-174-4-17	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT
17._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT
18._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT
19._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT
20._GC-08-174-4-17	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AG	AC	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
1._GC-08-175-4-18	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
2._GC-08-174-4-17	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
3._GC-08-174-4-17	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
4._GC-04-034-2-16	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
5._GC-04-034-2-16	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
6._GC-04-034-2-16	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
7._GC-04-034-2-16	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
8._GC-04-034-2-16	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
9._TSA_644	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
10._TSA_644	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
11._TSA_644	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
12._TSA_644	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
13._GC-08-174-4-17	GG	GG	AC	CT	AA	GG	CC	CT	CC	CG	AT	CT	AA	TT
14._TSA_644	_	GG	AA	CT	AG	GG	CC	CT	CC	CG	_	CT	_	_
15._GC-08-175-4-18	GG	CG	_	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT
16._GC-08-174-4-17	GG	CG	AC	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT
17._GC-08-175-4-18	GG	CG	AC	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT
18._GC-08-175-4-18	GG	CG	AC	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT
19._GC-08-175-4-18	GG	CG	AC	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT
20._GC-08-174-4-17	GG	CG	AC	TT	AA	GT	CG	CT	CT	CG	AT	CT	AA	TT

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
1._GC-08-175-4-18	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
2._GC-08-174-4-17	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
3._GC-08-174-4-17	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
4._GC-04-034-2-16	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
5._GC-04-034-2-16	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
6._GC-04-034-2-16	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
7._GC-04-034-2-16	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
8._GC-04-034-2-16	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
9._TSA_644	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
10._TSA_644	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
11._TSA_644	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
12._TSA_644	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
13._GC-08-174-4-17	AG	AA	CC	CT	GT	TT	CC	CT	TT	CC	AG	CC	X_X	X_X
14._TSA_644	AG	AA	_	CT	GT	TT	CC	CT	TT	CC	AG	_	X_X	X_X
15._GC-08-175-4-18	AG	_	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X
16._GC-08-174-4-17	AG	TT	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X
17._GC-08-175-4-18	AG	TT	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X
18._GC-08-175-4-18	AG	TT	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X
19._GC-08-175-4-18	AG	TT	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X
20._GC-08-174-4-17	AG	TT	CT	TT	GT	CT	CC	CC	CC	CG	AG	CT	X_X	X_X

Input profile: TSA_644

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Mars Center for Cocoa Science, Brazil

Location: 4216 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._TSA_644 GC-08-175-4-18

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._TSA_644 GC-08-174-4-17

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._TSA_644 GC-08-174-4-17

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._TSA_644 GC-04-034-2-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

5._TSA_644 GC-04-034-2-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._TSA_644 GC-04-034-2-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

7._TSA_644 GC-04-034-2-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

8._TSA_644 GC-04-034-2-16

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

9._TSA_644

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4216 7 > FP

Dapeng Zhang, 2016

10._TSA_644

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4216 4 > FP

Dapeng Zhang, 2016

11._TSA_644

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4216 3 > FP

Dapeng Zhang, 2016

12._TSA_644

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4216 2 > FP

Dapeng Zhang, 2016

13._TSA_644 GC-08-174-4-17

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._TSA_644

97 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8, Row 1 13_15

Dapeng Zhang, 2016

15._TSA_644 GC-08-175-4-18

72.4 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._TSA_644 GC-08-174-4-17

71.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._TSA_644 GC-08-175-4-18

71.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._TSA_644 GC-08-175-4-18

71.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

19._TSA_644 GC-08-175-4-18

71.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

20._TSA_644 GC-08-174-4-17

71.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520